Stem-loop sly-MIR390a

Accession

MI0029117

Description

Solanum lycopersicum sly-MIR390a precursor miRNA

Literature search

17 open access papers mention sly-MIR390a
(63 sentences)

Sequence

agagaucaacuaugaauguuguucuuguggaaauggcauggggaaucuauaAAGCUCAGGAGGGAUAGCACCaugaauacaucuuaauggcuaucuauagCGCUAUCCAUCCUGAGUUUUAuggcuucuucaugcucgcuuuuggugcuucauguugaucuuu
.(((((((((.(((((.((.......(((.....(((((((((((.(((((((((((((((.(((((((..(((............)))((((....))))))))))).))))))))))))))).)))))))))))))).......)))))))))))))))).

Structure

a         u     u  uguucuu   gaaau           u               G       ----------AC   gaaua 
 gagaucaac augaa gu       gug     ggcauggggaa cuauaAAGCUCAGGA GGAUAGC            Cau     c
 ||||||||| ||||| ||       |||     ||||||||||| ||||||||||||||| |||||||            |||      
 uucuaguug uacuu cg       cgc     ucguacuucuu gguAUUUUGAGUCCU CCUAUCG            gua     a
u         -     -  ugguuuu   -----           c               A       Cgauaucuaucg   auucu 

Annotation confidence Not enough data

Genome context

chr10: 59349779-59349941 [-]

Mature sly-miR390a-5p

• Accession: MIMAT0035467
• Description: Solanum lycopersicum sly-miR390a-5p mature miRNA
• Sequence: 52 - AAGCUCAGGAGGGAUAGCACC - 72
• Evidence: experimental ; Illumina [1]

Mature sly-miR390a-3p

• Accession: MIMAT0035468
• Description: Solanum lycopersicum sly-miR390a-3p mature miRNA
• Sequence: 101 - CGCUAUCCAUCCUGAGUUUUA - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739