Stem-loop sly-MIR9477

Accession

MI0029119

Description

Solanum lycopersicum sly-MIR9477 precursor miRNA

Literature search

2 open access papers mention sly-MIR9477
(3 sentences)

Sequence

6677 reads, 166.0 reads per million, 76 experiments

guuaaucuauugagggaguguauccgguuuuucgaauuuuauaucugaacuaucacuaagUGUUUAUCGACACACACCUCAAcuauccguuguucccuuuuccuaccugaaugauggugauauucuagguugggaaagGGAACAACUGAUAGUUGAGGUAuguuucgauaaacauuuggugauaguucagguugggaacucggaaaaaggaauacuugaucuguguuuuugac
(((((..(((.((..((((((.(((..((((((((.((((..((((((((((((((((((((((((((((.(((.((((((((((((.(((((((((((((((.(((((((((.......))))).)))).))))))))))))))).)))))))))))).))).))))))))))))))))))))))))))))..)))).)))))))).)))))))))..)).)))...)))))

Structure

     -uc   u  gg      a   gg        a    au                            C   C            c               u    -     au 
guuaa   uau ga  gagugu ucc  uuuuucga uuuu  aucugaacuaucacuaagUGUUUAUCGA ACA ACCUCAAcuauc guuguucccuuuucc accu gaaug  g
|||||   ||| ||  |||||| |||  |||||||| ||||  |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||| |||||  g
caguu   gug cu  uucaua agg  aaaaggcu aagg  uggacuugauagugguuuacaaauagcu ugu UGGAGUUGAUAG CAACAAGGgaaaggg ugga cuuau  u
     uuu   u  ag      -   -a        c    gu                            u   A            U               u    u     ag 

Annotation confidence Low

Genome context

chr6: 43739860-43740092 [+]

Mature sly-miR9477-5p

• Accession: MIMAT0035471
• Description: Solanum lycopersicum sly-miR9477-5p mature miRNA
• Sequence: 61 - UGUUUAUCGACACACACCUCAA - 82
• Evidence: experimental ; Illumina [1]

Mature sly-miR9477-3p

• Accession: MIMAT0035472
• Description: Solanum lycopersicum sly-miR9477-3p mature miRNA
• Sequence: 139 - GGAACAACUGAUAGUUGAGGUA - 160
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739