Stem-loop sly-MIR396b

Accession

MI0029124

Description

Solanum lycopersicum sly-MIR396b precursor miRNA

Literature search

22 open access papers mention sly-MIR396b
(125 sentences)

Sequence

2111603 reads, 56887.0 reads per million, 82 experiments

gaugaccaaguccuagucaugcuuUUCCACAGCUUUCUUGAACUUcuucuugcuaaauuuugaucucuaaauugauaauuuugagaugagauuugaagcuaugaaaGUCCAAGAAAGCUGUGGGAAAAGAUggcaagcuuuggacuuauu
.......((((((..(((((..((((((((((((((((((.((((......(((.((.(((.(((((.(((((...))))).))))).))).))..))).....)))).))))))))))))))))))..))))).......))))))...

Structure

gaugacc      -----ua     gc                  A    cuucuu   -a  u   g     u     g 
       aagucc       gucau  uuUUCCACAGCUUUCUUG ACUU      gcu  aa uuu aucuc aaauu  
       ||||||       |||||  |||||||||||||||||| ||||      |||  || ||| ||||| ||||| a
       uucagg       cggUA  AAAGGGUGUCGAAAGAAC UGaa      cga  uu aga uagag uuuaa  
----uua      uuucgaa     GA                  C    -aguau   ag  u   g     u     u 

Annotation confidence Medium

Genome context

chr7: 2628748-2628897 [-]

Mature sly-miR396b-5p

• Accession: MIMAT0035481
• Description: Solanum lycopersicum sly-miR396b-5p mature miRNA
• Sequence: 25 - UUCCACAGCUUUCUUGAACUU - 45
• Evidence: experimental ; Illumina [1]

Mature sly-miR396b-3p

• Accession: MIMAT0055740
• Description: Solanum lycopersicum sly-miR396b-3p mature miRNA
• Sequence: 107 - GUCCAAGAAAGCUGUGGGAAAAGAU - 131
• Evidence: experimental ; unknown

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739