Stem-loop bma-mir-2f

Accession

MI0029190

Description

Brugia malayi bma-mir-2f precursor miRNA

Literature search

3 open access papers mention bma-mir-2f
(29 sentences)

Sequence

34113 reads, 983.0 reads per million, 17 experiments

ucucgaaagugcgagugacagcAGCCGUAUCGACUGUGACAUGauguuugauuaucugucaUAUCACAAGCCCGAUACGACCAUcuguacuugugcuauucccgaa
((..(((((((((((((.(((....(((((((..(((((.(((((............))))).)))))....))))))).....))))))))))))).)))..)).

Structure

-  uc   -          a   -cAGC       --AC     C     guuug 
 uc  gaa agugcgagug cag     CGUAUCG    UGUGA AUGau     a
 ||  ||| |||||||||| |||     |||||||    ||||| |||||      
 ag  cuu ucguguucau guc     GCAUAGC    ACACU Uacug     u
a  cc   a          -   UACCA       CCGA     A     ucuau 

Annotation confidence High

Genome context

Bmal_v3_scaffold153: 23624-23729 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from bma-mir-2f

Mature bma-miR-2f-5p

• Accession: MIMAT0057254
• Description: Brugia malayi bma-miR-2f-5p mature miRNA
• Sequence: 23 - AGCCGUAUCGACUGUGACAUG - 43
• Evidence: experimental ; Illumina [1]

Mature bma-miR-2f-3p

• Accession: MIMAT0037490
• Description: Brugia malayi bma-miR-2f-3p mature miRNA
• Sequence: 62 - UAUCACAAGCCCGAUACGACCAU - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498