Stem-loop ath-MIR826b

Accession

MI0029231

Description

Arabidopsis thaliana ath-MIR826b precursor miRNA

Literature search

3 open access papers mention ath-MIR826b
(21 sentences)

Sequence

524 reads, 4.0 reads per million, 65 experiments

uaugagauaaucUGGUUUUGGACACGUGAAAAUuaacuuuucacagcagcaauaugauaugauUUUCACGUAUCCAAAACCGGAcuauaucaua
(((((.(((.((((((((((((.((((((((((((.....(((...........)))..)))))))))))).)))))))))))).))).)))))

Structure

     g   a            C            acuuu   cagc 
uauga aua ucUGGUUUUGGA ACGUGAAAAUua     uca    a
||||| ||| |||||||||||| ||||||||||||     |||    g
auacu uau AGGCCAAAACCU UGCACUUUuagu     agu    c
     a   c            A            ---au   auaa 

Annotation confidence High

Comments

This sequence was named MIR5090 in [1], but is unrelated to the human mir-5090 sequence (MIR:MI0017979).

Genome context

chr4: 1340521-1340614 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR826b

Mature ath-miR826b-5p

• Accession: MIMAT0035543
• Description: Arabidopsis thaliana ath-miR826b-5p mature miRNA
• Sequence: 13 - UGGUUUUGGACACGUGAAAAU - 33
• Evidence: not_experimental

Mature ath-miR826b-3p

• Accession: MIMAT0053998
• Description: Arabidopsis thaliana ath-miR826b-3p mature miRNA
• Sequence: 64 - UUUCACGUAUCCAAAACCGGA - 84
• Evidence: experimental ; unknown

References

1. PubMed ID: 24367020
   Two young MicroRNAs originating from target duplication mediate nitrogen starvation adaptation via regulation of glucosinolate synthesis in Arabidopsis thaliana
   "He H, Liang G, Li Y, Wang F, Yu D"
   "Plant Physiol (2014) 164:853-865