Stem-loop bdi-MIR5200a

Accession

MI0029233

Description

Brachypodium distachyon bdi-MIR5200a precursor miRNA

Literature search

3 open access papers mention bdi-MIR5200a
(19 sentences)

Sequence

aaagcacuagaGCCUUAGGGAAUAUCUACACUaguaaguucuuuuccuuucuucuggacaugcuuagcagUGUAGAUACUCCCUAAGGCUUcggucguauu
...(((((.((((((((((((.((((((((((..(((((.....(((........)))...)))))..)))))))))).)))))))))))).))).))...

Structure

aaa  -   a            A          ag     ucuuu   uuu 
   gc acu gaGCCUUAGGGA UAUCUACACU  uaagu     ucc   c
   || ||| |||||||||||| ||||||||||  |||||     |||    
   ug ugg UUCGGAAUCCCU AUAGAUGUga  auucg     agg   u
uua  c   c            C          cg     --uac   ucu 

Annotation confidence Not enough data

Genome context

1: 47454224-47454324 [+]

Mature bdi-miR5200a-5p

• Accession: MIMAT0035544
• Description: Brachypodium distachyon bdi-miR5200a-5p mature miRNA
• Sequence: 12 - GCCUUAGGGAAUAUCUACACU - 32
• Evidence: not_experimental

Mature bdi-miR5200a-3p

• Accession: MIMAT0035545
• Description: Brachypodium distachyon bdi-miR5200a-3p mature miRNA
• Sequence: 71 - UGUAGAUACUCCCUAAGGCUU - 91
• Evidence: not_experimental

References

1. PubMed ID: 24285787
   Regulation of FLOWERING LOCUS T by a microRNA in Brachypodium distachyon
   "Wu L, Liu D, Wu J, Zhang R, Qin Z, Liu D, Li A, Fu D, Zhai W, Mao L"
   "Plant Cell (2013) 25:4363-4377