Stem-loop dvi-mir-1002

Accession

MI0029236

Description

Drosophila virilis dvi-mir-1002 precursor miRNA

Sequence

aaggcuugcugcaaugaaaauugaacgcUUAAGUAGUUAAUACAAGGGCGAguuuuuucuugcaucGCAUUGUGUGACCUACUUAAAUgacaaauuuucaagacauuuauggg
...((.....))..((((((((...((.((((((((...((((((..((((((........)).)))).))))))...)))))))).))...)))))))).............

Structure

aaggcuugcugcaa        gaa  c        UUA      GG    -  uuu 
              ugaaaauu   cg UUAAGUAG   AUACAA  GCGA gu   u
              ||||||||   || ||||||||   ||||||  |||| ||    
              acuuuuaa   gU AAUUCAUC   UGUGUU  CGcu cg   u
-ggguauuuacaga        aca  A        CAG      -A    a  uuc 

Annotation confidence Low

Genome context

scaffold_12723: 5043880-5043992 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-1002

Mature dvi-miR-1002-5p

• Accession: MIMAT0035550
• Description: Drosophila virilis dvi-miR-1002-5p mature miRNA
• Sequence: 29 - UUAAGUAGUUAAUACAAGGGCGA - 51
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-1002-3p

• Accession: MIMAT0035551
• Description: Drosophila virilis dvi-miR-1002-3p mature miRNA
• Sequence: 67 - GCAUUGUGUGACCUACUUAAAU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372