miRBase entry: dvi-mir-1002

Stem-loop dvi-mir-1002

Accession

MI0029236

Description

Drosophila virilis dvi-mir-1002 precursor miRNA

Sequence

aaggcuugcugcaaugaaaauugaacgcUUAAGUAGUUAAUACAAGGGCGAguuuuuucuugcaucGCAUUGUGUGACCUACUUAAAUgacaaauuuucaagacauuuauggg
...((.....))..((((((((...((.((((((((...((((((..((((((........)).)))).))))))...)))))))).))...)))))))).............

Structure

aaggcuugcugcaa        gaa  c        UUA      GG    -  uuu 
              ugaaaauu   cg UUAAGUAG   AUACAA  GCGA gu   u
              ||||||||   || ||||||||   ||||||  |||| ||    
              acuuuuaa   gU AAUUCAUC   UGUGUU  CGcu cg   u
-ggguauuuacaga        aca  A        CAG      -A    a  uuc

Annotation confidence Not enough data

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Genome context

scaffold_12723: 5043880-5043992 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-1002

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-1002-5p

Accession	MIMAT0035550
Description	Drosophila virilis dvi-miR-1002-5p mature miRNA
Sequence	29 - UUAAGUAGUUAAUACAAGGGCGA - 51
Evidence	experimental Illumina [1]

Mature dvi-miR-1002-3p

Accession	MIMAT0035551
Description	Drosophila virilis dvi-miR-1002-3p mature miRNA
Sequence	67 - GCAUUGUGUGACCUACUUAAAU - 88
Evidence	experimental Illumina [1]

References

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372