Stem-loop dvi-mir-311

Accession

MI0029246

Description

Drosophila virilis dvi-mir-311 precursor miRNA

Sequence

382807 reads, 16066.0 reads per million, 39 experiments

cguccgcaugaccauuuuaAGGACGGUAUUUGUGACAAUAUGUGcaguuaaaucaauuuguuuagcaUAUUGCACAUCUCCCGGCCUAAaaaugaaccgugcucucu
.....(((((..((((((.(((.(((....((((.((((((((((((..........))))...))))))))))))....))).))).))))))...))))).....

Structure

cgucc     -ac      a   A   UAUU    A        ---    uuaa 
     gcaug   cauuuu AGG CGG    UGUG CAAUAUGU   Gcag    a
     |||||   |||||| ||| |||    |||| ||||||||   ||||     
     cgugc   guaaaA UCC GCC    ACAC GUUAUacg   uguu    u
ucucu     caa      A   G   CUCU    -        auu    uaac 

Annotation confidence High

Genome context

scaffold_12875: 13668884-13668990 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-311

Mature dvi-miR-311-5p

• Accession: MIMAT0035566
• Description: Drosophila virilis dvi-miR-311-5p mature miRNA
• Sequence: 20 - AGGACGGUAUUUGUGACAAUAUGUG - 44
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-311-3p

• Accession: MIMAT0035567
• Description: Drosophila virilis dvi-miR-311-3p mature miRNA
• Sequence: 68 - UAUUGCACAUCUCCCGGCCUAA - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372