Stem-loop dvi-mir-962

Accession

MI0029255

Description

Drosophila virilis dvi-mir-962 precursor miRNA

Sequence

80463 reads, 311.0 reads per million, 37 experiments

cacacacacauaagaaagggcgccucaaauuAUAAGGUAGAGAAAUUGUUGUCUacuuuacauauggugagACAUCAAUUCACUAGCUUUCAAuuuguacgcccaaaugcaacggaaccauu
.................(((((...((((((..(((.(((.(((.(((.((((((((........))).))))).)))))).))).)))..))))))..)))))..................

Structure

-cacacacacauaagaaa     ccu      AU   G   A   A   U     -   uua 
                  gggcg   caaauu  AAG UAG GAA UUG UGUCU acu   c
                  |||||   ||||||  ||| ||| ||| ||| ||||| |||    
                  cccgc   guuuAA  UUC AUC CUU AAC ACAga ugg   a
uuaccaaggcaacguaaa     -au      CU   G   A   -   U     g   uau 

Annotation confidence High

Genome context

scaffold_12963: 3615419-3615540 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-962

Mature dvi-miR-962-5p

• Accession: MIMAT0035581
• Description: Drosophila virilis dvi-miR-962-5p mature miRNA
• Sequence: 32 - AUAAGGUAGAGAAAUUGUUGUCU - 54
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-962-3p

• Accession: MIMAT0053506
• Description: Drosophila virilis dvi-miR-962-3p mature miRNA
• Sequence: 72 - ACAUCAAUUCACUAGCUUUCAA - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372