Stem-loop dvi-mir-963

Accession

MI0029256

Description

Drosophila virilis dvi-mir-963 precursor miRNA

Sequence

gaugggcauaaacaacaaucuaaucugaAACAAGGUACAUAUCAGAGUGUUUCuuaaauuugauuauugaaaccucuguauauaccuuucauuggauuaaacugauaagcacauguuucaaa
.(((.((.........(((((((..((((...(((((.(((.(((((.(((((...............))))))))))))).))))))))))))))))..........)).)))........

Structure

-------g   g  -auaaacaac       uc    ACA     C   U     U     uuaaau 
        aug gc          aaucuaa  ugaA   AGGUA AUA CAGAG GUUUC      u
        ||| ||          |||||||  ||||   ||||| ||| ||||| |||||      u
        uac cg          uuagguu  acuu   uccau uau gucuc caaag      g
aaacuuug   a  aauagucaaa       --    ---     a   -     -     uuauua 

Annotation confidence Low

Genome context

scaffold_12963: 3616341-3616462 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-963

Mature dvi-miR-963-5p

• Accession: MIMAT0035582
• Description: Drosophila virilis dvi-miR-963-5p mature miRNA
• Sequence: 29 - AACAAGGUACAUAUCAGAGUGUUUC - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372