miRBase entry: dvi-mir-969

Stem-loop dvi-mir-969

Accession

MI0029260

Description

Drosophila virilis dvi-mir-969 precursor miRNA

Sequence

agcagcucgcgcuucugcccuacgcacgAGUUCCACUAAUCAAGUUUUGagcggauucgaaagucgaaAACUUGACACGUUGAGCUCGUccguggggcggcauucaagccagaagagcaca
........((.(((((((((((((.((((((((.((...(((((((((..((..........))..)))))))))...)).)))))))).))))))))(((......)))))))).))...

Structure

agcagcuc  g     ------------        c        C  UAA         Ga  ggau 
        gc cuucu            gcccuacg acgAGUUC AC   UCAAGUUUU  gc    u
        || |||||            |||||||| |||||||| ||   |||||||||  ||     
        cg gaaga            cggggugc UGCUCGAG UG   AGUUCAAaa  ug    c
-----aca  a     ccgaacuuacgg        c        U  CAC         gc  aaag

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_12928: 1264079-1264199 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-969

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-969-5p

Accession	MIMAT0035588
Description	Drosophila virilis dvi-miR-969-5p mature miRNA
Sequence	29 - AGUUCCACUAAUCAAGUUUUG - 49
Evidence	experimental Illumina [1]

Mature dvi-miR-969-3p

Accession	MIMAT0035589
Description	Drosophila virilis dvi-miR-969-3p mature miRNA
Sequence	69 - AACUUGACACGUUGAGCUCGU - 89
Evidence	experimental Illumina [1]

References

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372