Stem-loop dvi-mir-993

Accession

MI0029270

Description

Drosophila virilis dvi-mir-993 precursor miRNA

Sequence

90462 reads, 351.0 reads per million, 30 experiments

gggugaagugggggucagugaauaacagaaacgcucccgugaccUACCCUGUAGUUCCGGGCUUUUGuuuauagugcauucaaaugccauucucaauuaucaGAAGCUCGUCUCUACAGGUAUCUcacaggguagaaagaaacaacucaaaaagcgaauuuguugaauu
.(.(((........))).)...(((((((..(((((((((((..((((.(((((...((((((((((...(((((((((....))))........)))))))))))))))...)))))))))..)))).)))....................))))..)))))))....

Structure

gggugaagugggggucagugaa       aa    --------------------   -    cc    C     UUC          uuu     --------    u 
                      uaacaga  cgcu                    ccc guga  UACC UGUAG   CGGGCUUUUG   auagu        gcau c
                      |||||||  ||||                    ||| ||||  |||| |||||   ||||||||||   |||||        ||||  
                      guuguuu  gcga                    ggg cacU  AUGG ACAUC   GCUCGAAGac   uauua        cgua a
------------------uuaa       aa    aaaacucaacaaagaaagau   a    CU    -     UCU          ---     acucuuac    a 

Annotation confidence Medium

Genome context

scaffold_13047: 6141821-6141989 [-]

Mature dvi-miR-993-5p

• Accession: MIMAT0035604
• Description: Drosophila virilis dvi-miR-993-5p mature miRNA
• Sequence: 45 - UACCCUGUAGUUCCGGGCUUUUG - 67
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-993-3p

• Accession: MIMAT0035605
• Description: Drosophila virilis dvi-miR-993-3p mature miRNA
• Sequence: 103 - GAAGCUCGUCUCUACAGGUAUCU - 125
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372