miRBase entry: dvi-mir-996

Stem-loop dvi-mir-996

Accession

MI0029273

Description

Drosophila virilis dvi-mir-996 precursor miRNA

Sequence

cucugacucuauuuugucGGCGAACAUGGAUCUAGUGCACGguuguucaugauuaaguucgUGACUAGAUUUCAUGCUCGUcuauuaaguugggucaa
...((((((.((((.((.(((((.((((((((((((.(((((................))))))))))).)))))).))))).)).)))).)))))).

Structure

cuc      u    u  c     A      -      G     uuguuca 
   ugacuc auuu gu GGCGA CAUGGA UCUAGU CACGg       u
   |||||| |||| || ||||| |||||| |||||| |||||        
   acuggg ugaa ua cUGCU GUACUU AGAUCA GUgcu       g
--a      u    u  u     C      U      -     ugaauua

Annotation confidence Not enough data

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Genome context

scaffold_12822: 2333414-2333511 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-996

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-996-5p

Accession	MIMAT0035610
Description	Drosophila virilis dvi-miR-996-5p mature miRNA
Sequence	19 - GGCGAACAUGGAUCUAGUGCACG - 41
Evidence	experimental Illumina [1]

Mature dvi-miR-996-3p

Accession	MIMAT0035611
Description	Drosophila virilis dvi-miR-996-3p mature miRNA
Sequence	62 - UGACUAGAUUUCAUGCUCGU - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372