miRBase entry: dvi-mir-998

Stem-loop dvi-mir-998

Accession

MI0029274

Description

Drosophila virilis dvi-mir-998 precursor miRNA

Sequence

gcucgcaacgcgcaagcgcaaauucauuuuggaACUGAAUUCUCGUGGGUCUGCAgugcacugaccguugcagagggcaauuguucaaauugaaauugaaauuuugUAGCACCAUGAGAUUCAGCUCuggcgugaauuucaaacaugcau
(((.((.....)).)))((((((((((.(((((.((((((.(((((((((((((...)))..))))(((((((((..(((((...........)))))...)))))))))..)))))))))))).))))).))))))).......)))..

Structure

gcucgcaacgcgcaagc   -------       u     A      U      ----------------------------------------------    --   A 
                 gca       aauucau uugga CUGAAU CUCGUG                                              GGUC  UGC  
                 |||       ||||||| ||||| |||||| ||||||                                              ||||  ||| g
                 cgu       uuaagug gguCU GACUUA GAGUAC                                              ccag  acg  
---------------ua   acaaacu       c     C      -      CACGAUguuuuaaaguuaaaguuaaacuuguuaacgggagacguug    uc   u

Annotation confidence Not enough data

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Genome context

scaffold_13047: 6339587-6339736 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-998

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-998-5p

Accession	MIMAT0035612
Description	Drosophila virilis dvi-miR-998-5p mature miRNA
Sequence	34 - ACUGAAUUCUCGUGGGUCUGCA - 55
Evidence	experimental Illumina [1]

Mature dvi-miR-998-3p

Accession	MIMAT0035613
Description	Drosophila virilis dvi-miR-998-3p mature miRNA
Sequence	107 - UAGCACCAUGAGAUUCAGCUC - 127
Evidence	experimental Illumina [1]

References

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372