Stem-loop dvi-mir-9538

Accession

MI0029277

Description

Drosophila virilis dvi-mir-9538 precursor miRNA

Sequence

uauuaguucuugguuaaaAUUGUUCUGUCCGGUUGCUccucuguguauuggccaagAUGAGAUCAGUCAGAAUAAUUGAuacccuggacaaaaa
.....((((..(((...((((((((((.(.(((..(((.(((..((....))..))).)))))).).))))))))))...)))..)))).....

Structure

uauua    uu   uaa          U C   UG   c   gu  a 
     guuc  ggu   aAUUGUUCUG C GGU  CUc ucu  gu u
     ||||  |||   |||||||||| | |||  ||| |||  ||  
     cagg  cca   UUAAUAAGAC G CUA  GAG Aga  cg u
aaaaa    uc   uAG          U A   --   U   ac  g 

Annotation confidence Low

Genome context

scaffold_12855: 6282625-6282718 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from dvi-mir-9538

Mature dvi-miR-9538-5p

• Accession: MIMAT0035618
• Description: Drosophila virilis dvi-miR-9538-5p mature miRNA
• Sequence: 19 - AUUGUUCUGUCCGGUUGCU - 37
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-9538-3p

• Accession: MIMAT0035619
• Description: Drosophila virilis dvi-miR-9538-3p mature miRNA
• Sequence: 57 - AUGAGAUCAGUCAGAAUAAUUGA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372