Stem-loop dvi-mir-9549

Accession

MI0029289

Description

Drosophila virilis dvi-mir-9549 precursor miRNA

Sequence

uuugggcaauuuggcuacuugcgcuguugauauccagCAGUGUUAGCACAAGUCCUUUGuauugcaacccaauauucgAAGGACCUCUGCUAAGACUAUuggaaauuagcagaaauccacagcugcagauggcaugag
.............((((.(((((((((((((.(((((.(((.((((((...(((((((((((((.....)))))..))))))))...)))))).))).))))).))))))))...........))))).)))).....

Structure

uuugggcaauuug    c     -----------        a     C   G      CAA        --     c 
             gcua uugcg           cuguugau uccag AGU UUAGCA   GUCCUUUG  uauug a
             |||| |||||           |||||||| ||||| ||| ||||||   ||||||||  ||||| a
             cggu gacgu           gacgauua agguU UCA AAUCGU   CAGGAAgc  auaac c
--------gagua    a     cgacaccuaaa        a     A   G      CUC        uu     c 

Annotation confidence Low

Genome context

scaffold_13049: 3076866-3077003 [+]

Mature dvi-miR-9549-5p

• Accession: MIMAT0035642
• Description: Drosophila virilis dvi-miR-9549-5p mature miRNA
• Sequence: 38 - CAGUGUUAGCACAAGUCCUUUG - 59
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-9549-3p

• Accession: MIMAT0035643
• Description: Drosophila virilis dvi-miR-9549-3p mature miRNA
• Sequence: 79 - AAGGACCUCUGCUAAGACUAU - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372