Accession
MI0029296
Description
Brassica rapa
bra-MIR9552a precursor miRNA
Literature search
1 open access papers mention bra-MIR9552a
(1 sentences)
(1 sentences)
Sequence
uguuguugucagcagaCUAUCGGUCUACUCGGUCAGCgcuagcuucuucaucaccggacagacuaaucuaguggagaagcugcagaaguuuagccuguccggugaggaagaagcuagcgcUGACCAAGUAGACCGAUAGUCuacugacaacaacagcgucagccaacuucuuaaugucuucgaucgcagagucgaagaugucgccgaguguuuc
((((((((((((.((((((((((((((((.(((((((((((((((((((.(((((((((((.((((.((..((.((...)).))..)).)))).))))))))))).))))))))))))))))))).)))))))))))))))).))))))))))))((....))..((((....(((((((((((......)))))))))))....)))).....
((((((((((((.((((((((((((((((.(((((((((((((((((((.(((((((((((.((((.((..((.((...)).))..)).)))).))))))))))).))))))))))))))))))).)))))))))))))))).))))))))))))((....))..((((....(((((((((((......)))))))))))....)))).....
Structure
----------------------------------------------------------- c C a a u ag g a
uguuguugucag agaCUAUCGGUCUACU GGUCAGCgcuagcuucuuc ucaccggacag cuaa cu ug ag
|||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| |||| || || || a
acaacaacaguc uCUGAUAGCCAGAUGA CCAGUcgcgaucgaagaag aguggccuguc gauu ga ac uc
cuuugugagccgcuguagaagcugagacgcuagcuucuguaauucuucaaccgacugcg a A g c u ag g g
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
chrA8: 9143909-9144122 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bra-MIR9552a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature bra-miR9552a-5p
| Accession | MIMAT0035653 |
| Description | Brassica rapa bra-miR9552a-5p mature miRNA |
| Sequence | 17 - CUAUCGGUCUACUCGGUCAGC - 37 |
| Evidence |
experimental
Illumina [1] |
Mature bra-miR9552a-3p
| Accession | MIMAT0035654 |
| Description | Brassica rapa bra-miR9552a-3p mature miRNA |
| Sequence | 121 - UGACCAAGUAGACCGAUAGUC - 141 |
| Evidence |
experimental
Illumina [1] |
References
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