Stem-loop bra-MIR9554

Accession

MI0029300

Description

Brassica rapa bra-MIR9554 precursor miRNA

Sequence

acuucuagGAAUGAUACUUGGAUAUAAUCauggaauggaguacauccgauucuuaaguuuuggcacauucuucuaugaggccaaaagagaaacuuaaggaucauauacucuauuccaagaUCAUAUCCAAGUAUCAUUCCUggaaguaaa
(((((((((((((((((((((((((.(((.((((((((((((.((..(((((((((((((((((.(((......)))..))))......))))))))))))))).)))))))))))).))).)))))))))))))))))))))))))...

Structure

---                         A   a            c  cc             ------    -a   uc 
   acuucuagGAAUGAUACUUGGAUAU AUC uggaauggagua au  gauucuuaaguuu      uggc  cau  u
   ||||||||||||||||||||||||| ||| |||||||||||| ||  |||||||||||||      ||||  |||   
   ugaaggUCCUUACUAUGAACCUAUA Uag accuuaucucau ua  cuaggaauucaaa      accg  gua  u
aaa                         C   a            a  --             gagaaa    ga   uc 

Annotation confidence Not enough data

Genome context

chrA6: 18355807-18355956 [+]

Mature bra-miR9554-5p

• Accession: MIMAT0035661
• Description: Brassica rapa bra-miR9554-5p mature miRNA
• Sequence: 9 - GAAUGAUACUUGGAUAUAAUC - 29
• Evidence: experimental ; Illumina [1]

Mature bra-miR9554-3p

• Accession: MIMAT0035662
• Description: Brassica rapa bra-miR9554-3p mature miRNA
• Sequence: 121 - UCAUAUCCAAGUAUCAUUCCU - 141
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146