Stem-loop bra-MIR9557

Accession

MI0029303

Description

Brassica rapa bra-MIR9557 precursor miRNA

Literature search

1 open access papers mention bra-MIR9557
(1 sentences)

Sequence

gccgcuuuauucuucacuuacgcaugcugucuuuacaguucacacugaUUUUGCGUUUCAACUCGGUCCucauuucuuuauaacgaaguggaggaacaaaaagauguuuucagaagaacauugaagaggaagagaaugaaagcugcaaguuaaaagaaaugaggGCUGAGUUGGAACGCAAAAUCuuu
.........................(((((....))))).......(((((((((((((((((((((((((((((((((.((((...((((...............(((((((.......)))))))...............))))..)))))))))))))))))))))))))))))))))))))...

Structure

gccgcuuuauucuucacuuacgcaugcugucuuuacaguucacacu                                 a    gaa    aggaacaaaaagaug       aa 
                                              gaUUUUGCGUUUCAACUCGGUCCucauuucuuu uaac   gugg               uuuucag  g
                                              ||||||||||||||||||||||||||||||||| ||||   ||||               |||||||  a
                                              CUAAAACGCAAGGUUGAGUCGggaguaaagaaa auug   cguc               agaaguu  a
-------------------------------------------uuu                                 -    -aa    gaaaguaagagaagg       ac 

Annotation confidence Not enough data

Genome context

chrA7: 1046108-1046295 [-]

Mature bra-miR9557-5p

• Accession: MIMAT0035667
• Description: Brassica rapa bra-miR9557-5p mature miRNA
• Sequence: 49 - UUUUGCGUUUCAACUCGGUCC - 69
• Evidence: experimental ; Illumina [1]

Mature bra-miR9557-3p

• Accession: MIMAT0035668
• Description: Brassica rapa bra-miR9557-3p mature miRNA
• Sequence: 165 - GCUGAGUUGGAACGCAAAAUC - 185
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146