Stem-loop bra-MIR9560b

Accession

MI0029307

Description

Brassica rapa bra-MIR9560b precursor miRNA

Gene family

MIPF0002116; MIR9560

Literature search

1 open access papers mention bra-MIR9560b
(1 sentences)

Sequence

acuaucuuauuuuaagcuuaaguguguauugACAGGUGGUGGAACAAAUAUGAGUuuuugaacauuagucaaacaaaauuaaacUCAUAUUAGUUCUACCUCCUGCUGaagcccacauuaaucugaauaagauuug
...(((((((((..((.(((((((.((.(((.((((.((((((((.(((((((((((((((.......))))........))))))))))).)))))))).)))).))).)).))).)))).)))))))))))...

Structure

acu         ua  c    -   u  a   A    U        A           --------    ac 
   aucuuauuu  ag uuaa gug gu uug CAGG GGUGGAAC AAUAUGAGUuu        uuga  a
   |||||||||  || |||| ||| || ||| |||| |||||||| |||||||||||        ||||  u
   uagaauaag  uc aauu cac cg aGU GUCC CCAUCUUG UUAUACUcaaa        aacu  u
guu         --  u    a   c  a   C    U        A           uuaaaaca    ga 

Annotation confidence Not enough data

Genome context

chrA6: 18161518-18161653 [+]

Mature bra-miR9560b-5p

• Accession: MIMAT0035675
• Description: Brassica rapa bra-miR9560b-5p mature miRNA
• Sequence: 32 - ACAGGUGGUGGAACAAAUAUGAGU - 55
• Evidence: experimental ; Illumina [1]

Mature bra-miR9560b-3p

• Accession: MIMAT0035676
• Description: Brassica rapa bra-miR9560b-3p mature miRNA
• Sequence: 85 - UCAUAUUAGUUCUACCUCCUGCUG - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146