Stem-loop bra-MIR9562

Accession

MI0029310

Description

Brassica rapa bra-MIR9562 precursor miRNA

Sequence

agugucuuaaaacauuuccaauuccacuguaaaauggaguggACUAUGCAAUUGUGAACAAACaaaaaauucauuacuauauaugcaguaauguuuuuauguUUAUUCACAACUGCAUAAUUCacucuauuuugcaguagauuuugcag
.((((......))))...(((.((.((((((((((((((((((.((((((.(((((((.(((((.((((..(((((((........))))))).)))).))))).))))))).)))))).)))))))))))))))))).))..)))...

Structure

agugucuuaaaacauuuc   -u  c                  C      A       C     a    uu       aua 
                  caa  uc acuguaaaauggaguggA UAUGCA UUGUGAA AAACa aaaa  cauuacu   u
                  |||  || |||||||||||||||||| |||||| ||||||| ||||| ||||  |||||||    
                  guu  ag ugacguuuuaucucaCUU AUACGU AACACUU UUugu uuuu  guaauga   a
---------------gac   uu  a                  A      C       A     a    -u       cgu 

Annotation confidence Not enough data

Genome context

chrA2: 18896191-18896339 [+]

Mature bra-miR9562-5p

• Accession: MIMAT0035681
• Description: Brassica rapa bra-miR9562-5p mature miRNA
• Sequence: 43 - ACUAUGCAAUUGUGAACAAAC - 63
• Evidence: experimental ; Illumina [1]

Mature bra-miR9562-3p

• Accession: MIMAT0035682
• Description: Brassica rapa bra-miR9562-3p mature miRNA
• Sequence: 103 - UUAUUCACAACUGCAUAAUUC - 123
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146