Stem-loop gga-mir-125b-1

Accession

MI0029337

Description

Gallus gallus gga-mir-125b-1 precursor miRNA

Literature search

26 open access papers mention gga-mir-125b-1
(64 sentences)

Sequence

503138 reads, 6033 reads per million, 5 experiments

guugcgccccucucaaUCCCUGAGACCCUAACUUGUGAuguuuagcuuuuaaauccacggguuaggcucuugggagcugugaguugugcuuu
...((((..(((.((.((((.((((.(((((((((((..(((((.....))))).))))))))))).))))))))..)).)))..))))...

Structure

guu    cc   u  -a    U    C           Au     g 
   gcgc  cuc ca  UCCC GAGA CCUAACUUGUG  guuua c
   ||||  ||| ||  |||| |||| |||||||||||  ||||| u
   cgug  gag gu  aggg uucu ggauugggcac  uaaau u
uuu    uu   u  cg    -    c           -c     u 

Annotation confidence High

Genome context

chr24: 3360814-3360905 [+]

Mature gga-miR-125b-5p

• Accession: MIMAT0001105
• Description: Gallus gallus gga-miR-125b-5p mature miRNA
• Sequence: 17 - UCCCUGAGACCCUAACUUGUGA - 38
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196