miRBase entry: aca-mir-30c-2

Stem-loop aca-mir-30c-2

Accession

MI0029351

Description

Anolis carolinensis aca-mir-30c-2 precursor miRNA

Sequence

uagcagcgcaUGUAAACAUCCUACACUCUCAGCugugaauuugugguggCUGGGAGAAGGUUGUUUACACcuucu
..........((((((((.(((...(((((((((((.(.....).))))))))))).))).))))))))......

Structure

uagcagcgca        U   ACA           g a 
          UGUAAACA CCU   CUCUCAGCugu a u
          |||||||| |||   ||||||||||| | u
          ACAUUUGU GGA   GAGGGUCggug u u
----ucuucC        U   --A           g g

Annotation confidence Not enough data

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Genome context

GL343308.1: 254244-254318 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-30c-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-30c-5p

Accession	MIMAT0021924
Description	Anolis carolinensis aca-miR-30c-5p mature miRNA
Sequence	11 - UGUAAACAUCCUACACUCUCAGC - 33
Evidence	experimental Illumina [1]

Mature aca-miR-30c-2-3p

Accession	MIMAT0037563
Description	Anolis carolinensis aca-miR-30c-2-3p mature miRNA
Sequence	50 - CUGGGAGAAGGUUGUUUACAC - 70
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196