Stem-loop aca-mir-30c-2

Accession

MI0029351

Description

Anolis carolinensis aca-mir-30c-2 precursor miRNA

Sequence

39765 reads, 13813.0 reads per million, 2 experiments

uagcagcgcaUGUAAACAUCCUACACUCUCAGCUgugaauuugugguggCUGGGAGAAGGUUGUUUACACCUucu
..........((((((((.(((...(((((((((((.(.....).))))))))))).))).))))))))......

Structure

uagcagcgca        U   ACA           g a 
          UGUAAACA CCU   CUCUCAGCUgu a u
          |||||||| |||   ||||||||||| | u
          ACAUUUGU GGA   GAGGGUCggug u u
----ucuUCC        U   --A           g g 

Annotation confidence High

Genome context

GL343308.1: 254244-254318 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-30c-2

Mature aca-miR-30c-5p

• Accession: MIMAT0021924
• Description: Anolis carolinensis aca-miR-30c-5p mature miRNA
• Sequence: 11 - UGUAAACAUCCUACACUCUCAGCU - 34
• Evidence: experimental ; Illumina [1]

Mature aca-miR-30c-2-3p

• Accession: MIMAT0037563
• Description: Anolis carolinensis aca-miR-30c-2-3p mature miRNA
• Sequence: 50 - CUGGGAGAAGGUUGUUUACACCU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196