Stem-loop aca-mir-106

Accession

MI0029352

Description

Anolis carolinensis aca-mir-106 precursor miRNA

Sequence

5285 reads, 1865.0 reads per million, 2 experiments

ucggggugcAAAAGUGCUUAUAGUGCAGGUAGUGuguuggcaucuACUGCAGUGUUGGCACUUCCGUgccacgaug
(((.(((((..(((((((.(((.(((((.((((((....))).)))))))).))).)))))))..))))).)))..

Structure

--   g     AA       U   G     G   -   g 
  ucg ggugc  AAGUGCU AUA UGCAG UAG UGu u
  ||| |||||  ||||||| ||| ||||| ||| |||  
  agc ccgUG  UUCACGG UGU ACGUC Auc acg u
gu   a     CC       U   G     -   u   g 

Annotation confidence High

Genome context

GL344214.1: 22319-22394 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from aca-mir-106

Mature aca-miR-106-5p

• Accession: MIMAT0037564
• Description: Anolis carolinensis aca-miR-106-5p mature miRNA
• Sequence: 10 - AAAAGUGCUUAUAGUGCAGGUAGUG - 34
• Evidence: experimental ; Illumina [1]

Mature aca-miR-106-3p

• Accession: MIMAT0037565
• Description: Anolis carolinensis aca-miR-106-3p mature miRNA
• Sequence: 46 - ACUGCAGUGUUGGCACUUCCGU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196