Stem-loop cpi-let-7b

Accession

MI0029375

Description

Chrysemys picta cpi-let-7b precursor miRNA

Sequence

612499 reads, 7338.0 reads per million, 12 experiments

gcucuagcagggUGAGGUAGUAGGUUGUGUGGUUUcaggguagugauuuugccccaaucaggagauaaCUAUACAACCUACUGCCUUCCcug
.......(((((.(((((((((((((((((((((...((((((.....))))))..(((....)))))))))))))))))))))))))))))

Structure

gcucuag     U                     ---------Uca      u 
       caggg GAGGUAGUAGGUUGUGUGGUU            ggguag g
       ||||| |||||||||||||||||||||            |||||| a
       gucCC UUCCGUCAUCCAACAUAUCaa            cccguu u
-------     -                     uagaggacuaac      u 

Annotation confidence High

Genome context

KK088200.1: 3678396-3678487 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-let-7b

Mature cpi-let-7b-5p

• Accession: MIMAT0037598
• Description: Chrysemys picta cpi-let-7b-5p mature miRNA
• Sequence: 13 - UGAGGUAGUAGGUUGUGUGGUUU - 35
• Evidence: experimental ; Illumina [1]

Mature cpi-let-7b-3p

• Accession: MIMAT0059142
• Description: Chrysemys picta cpi-let-7b-3p mature miRNA
• Sequence: 69 - CUAUACAACCUACUGCCUUCC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196