Stem-loop cpi-let-7f-1

Accession

MI0029380

Description

Chrysemys picta cpi-let-7f-1 precursor miRNA

Sequence

2091421 reads, 24296.0 reads per million, 12 experiments

ccgaggcccugggggaUGAGGUAGUAGAUUGUAUAGUUUuagggucacacccggucucggagauaaCUAUACAGUCUACUGUCUUUCccg
(((......)))((((.(((((((((((((((((((((...((((...)))).((((...))))))))))))))))))))))))))))).

Structure

ccgaggcccugg    U                     ---------Uua    c 
            ggga GAGGUAGUAGAUUGUAUAGUU            gggu  
            |||| |||||||||||||||||||||            |||| a
            ccCU UUCUGUCAUCUGACAUAUCaa            ccca  
-----------g    -                     uagaggcucugg    c 

Annotation confidence High

Genome context

KK083246.1: 398670-398759 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-let-7f-1

Mature cpi-let-7f-5p

• Accession: MIMAT0037606
• Description: Chrysemys picta cpi-let-7f-5p mature miRNA
• Sequence: 17 - UGAGGUAGUAGAUUGUAUAGUUU - 39
• Evidence: experimental ; Illumina [1]

Mature cpi-let-7f-1-3p

• Accession: MIMAT0059143
• Description: Chrysemys picta cpi-let-7f-1-3p mature miRNA
• Sequence: 67 - CUAUACAGUCUACUGUCUUUC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196