Stem-loop cpi-let-7i

Accession

MI0029383

Description

Chrysemys picta cpi-let-7i precursor miRNA

Literature search

1 open access papers mention cpi-let-7i
(30 sentences)

Sequence

888576 reads, 9553.0 reads per million, 12 experiments

cccuggcUGAGGUAGUAGUUUGUGCUGUUggucggguugugacauugcccgcuguggagauaaCUGCGCAAGCUACUGCCUUGcuagugcug
..(((((.(((((((((((((((((.(((((.(((((.........)))))))........))).)))))))))))))))))))))).....

Structure

---cc     U                 U   --------  u     ugu 
     cuggc GAGGUAGUAGUUUGUGC GUU        gg cgggu   g
     ||||| ||||||||||||||||| |||        || |||||   a
     gaucG UUCCGUCAUCGAACGCG Caa        uc gcccg   c
gucgu     -                 U   uagaggug  -     uua 

Annotation confidence High

Genome context

KK082989.1: 2620659-2620750 [+]

Mature cpi-let-7i-5p

• Accession: MIMAT0037610
• Description: Chrysemys picta cpi-let-7i-5p mature miRNA
• Sequence: 8 - UGAGGUAGUAGUUUGUGCUGUU - 29
• Evidence: experimental ; Illumina [1]

Mature cpi-let-7i-3p

• Accession: MIMAT0037611
• Description: Chrysemys picta cpi-let-7i-3p mature miRNA
• Sequence: 64 - CUGCGCAAGCUACUGCCUUG - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196