Stem-loop cpi-mir-7a-1

Accession

MI0029387

Description

Chrysemys picta cpi-mir-7a-1 precursor miRNA

Sequence

499079 reads, 5380.0 reads per million, 12 experiments

ggauguuggucuaguucugugUGGAAGACUAGUGAUUUUGUUGUUuuuagauaacuaaaucgaCAACAAAUCGCAGUCUGCCAUAUGGcacaggccaugccucu
(((.((((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).)))))))).)).)))

Structure

   u  -      a  u        A     A       U      --     a 
gga gu uggucu gu cugugUGG AGACU GUGAUUU GUUGUU  uuuag u
||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
ucu cg accgga ca GGUAUACC UCUGA CGCUAAA CAACag  aaauc a
   c  u      -  c        G     -       -      cu     a 

Annotation confidence Medium

Genome context

KK083268.1: 510126-510229 [+]

Mature cpi-miR-7a-5p

• Accession: MIMAT0037617
• Description: Chrysemys picta cpi-miR-7a-5p mature miRNA
• Sequence: 22 - UGGAAGACUAGUGAUUUUGUUGUU - 45
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-7a-3p

• Accession: MIMAT0037618
• Description: Chrysemys picta cpi-miR-7a-3p mature miRNA
• Sequence: 64 - CAACAAAUCGCAGUCUGCCAUAUGG - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196