Stem-loop cpi-mir-9-1

Accession

MI0029391

Description

Chrysemys picta cpi-mir-9-1 precursor miRNA

Sequence

11091097 reads, 121964.0 reads per million, 12 experiments

acuucagggguugguuguuaUCUUUGGUUAUCUAGCUGUAUGaguggugucaauucuucAUAAAGCUAGAUAACCGAAAGUaaaaauaaccccauuacac
......(((((((....((((.(((((((((((((((.((((((.(((....))).)))))).))))))))))))))).))))...))))))).......

Structure

-acuuca       guug    C               G      u   g 
       gggguug    uuaU UUUGGUUAUCUAGCU UAUGag ggu u
       |||||||    |||| ||||||||||||||| |||||| |||  
       ccccaau    aaUG AAGCCAAUAGAUCGA AUAcuu uua c
cacauua       -aaa    A               A      c   a 

Annotation confidence High

Genome context

KK088189.1: 303582-303681 [+]

Mature cpi-miR-9-5p

• Accession: MIMAT0037622
• Description: Chrysemys picta cpi-miR-9-5p mature miRNA
• Sequence: 21 - UCUUUGGUUAUCUAGCUGUAUG - 42
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9-3p

• Accession: MIMAT0037623
• Description: Chrysemys picta cpi-miR-9-3p mature miRNA
• Sequence: 60 - AUAAAGCUAGAUAACCGAAAGU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196