Stem-loop cpi-mir-9-2

Accession

MI0029392

Description

Chrysemys picta cpi-mir-9-2 precursor miRNA

Sequence

11087310 reads, 121921.0 reads per million, 12 experiments

cugugaggaagcgaguuguuaUCUUUGGUUAUCUAGCUGUAUGaguguguuggucuucAUAAAGCUAGAUAACCGAAAGUaaaaacuccuucaugaucaucgu
.......((((.(((((.((((.(((((((((((((((.((((((.(.......))))))).))))))))))))))).)))).)))))))))...........

Structure

----cugugag    c     g    C               G      u ug 
           gaag gaguu uuaU UUUGGUUAUCUAGCU UAUGag g  u
           |||| ||||| |||| ||||||||||||||| |||||| |  u
           cuuc cucaa aaUG AAGCCAAUAGAUCGA AUAcuu c  g
ugcuacuagua    -     a    A               A      - ug 

Annotation confidence High

Genome context

KK082917.1: 3125064-3125166 [+]

Mature cpi-miR-9-5p

• Accession: MIMAT0037622
• Description: Chrysemys picta cpi-miR-9-5p mature miRNA
• Sequence: 22 - UCUUUGGUUAUCUAGCUGUAUG - 43
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9-3p

• Accession: MIMAT0037623
• Description: Chrysemys picta cpi-miR-9-3p mature miRNA
• Sequence: 59 - AUAAAGCUAGAUAACCGAAAGU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196