Stem-loop cpi-mir-9-3

Accession

MI0029393

Description

Chrysemys picta cpi-mir-9-3 precursor miRNA

Sequence

11097639 reads, 122036.0 reads per million, 12 experiments

agaaggagggcuguuucugUCUUUGGUUAUCUAGCUGUAUGaguguuauuaagccaucAUAAAGCUAGAUAACCGAAAGUagaaaugacuuccaacccu
....(((((...(((((((.((((((((((((((((.(((((..(((....)))..))))).)))))))))))).)))))))))))..)))))......

Structure

--agaa     gcu       U    -            G     gu   a 
      ggagg   guuucug CUUU GGUUAUCUAGCU UAUGa  guu u
      |||||   ||||||| |||| |||||||||||| |||||  |||  
      ccuuc   uaaagaU GAAA CCAAUAGAUCGA AUAcu  cga u
ucccaa     -ag       -    G            A     ac   a 

Annotation confidence High

Genome context

KK088241.1: 2631791-2631889 [-]

Mature cpi-miR-9-5p

• Accession: MIMAT0037622
• Description: Chrysemys picta cpi-miR-9-5p mature miRNA
• Sequence: 20 - UCUUUGGUUAUCUAGCUGUAUG - 41
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9-3p

• Accession: MIMAT0037623
• Description: Chrysemys picta cpi-miR-9-3p mature miRNA
• Sequence: 59 - AUAAAGCUAGAUAACCGAAAGU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196