Stem-loop cpi-mir-9-4

Accession

MI0029394

Description

Chrysemys picta cpi-mir-9-4 precursor miRNA

Sequence

gacuggguugguuuuugUCUUUGGUUAUCUAGCUGUAUGAguguaugugauaucaUAAAGCUAGAGAACCGAAUGUAaaaacugauucacuauucucca
...((((((((((((((..(((((((.(((((((.(((((............))))).))))))).)))))))..))))))))))))))..........

Structure

-------gac              UC       A       G     gugua 
          uggguugguuuuug  UUUGGUU UCUAGCU UAUGA     u
          ||||||||||||||  ||||||| ||||||| |||||      
          acuuagucaaaaAU  AAGCCAA AGAUCGA AUacu     g
accucuuauc              GU       G       A     auagu 

Annotation confidence Not enough data

Genome context

KK082993.1: 1808956-1809054 [+]

Mature cpi-miR-9-5p

• Accession: MIMAT0037622
• Description: Chrysemys picta cpi-miR-9-5p mature miRNA
• Sequence: 18 - UCUUUGGUUAUCUAGCUGUAUGA - 40
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9-4-3p

• Accession: MIMAT0037624
• Description: Chrysemys picta cpi-miR-9-4-3p mature miRNA
• Sequence: 56 - UAAAGCUAGAGAACCGAAUGUA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196