Stem-loop cpi-mir-10a

Accession

MI0029395

Description

Chrysemys picta cpi-mir-10a precursor miRNA

Sequence

347871 reads, 3926.0 reads per million, 12 experiments

augcaucugucuucuauaugUACCCUGUAGAUCCGAAUUUGUguaaaggaaauugugucaCAAAUUCGUAUCUAGGGGAAUauguaguugacacaaacacuac
.......((((..((((((((.((((.(((((.((((((((((...............)))))))))).))))))))).))))))))..))))..........

Structure

---augcauc    uu        A    G     C          uaaagg 
          uguc  cuauaugU CCCU UAGAU CGAAUUUGUg      a
          ||||  |||||||| |||| ||||| ||||||||||      a
          acag  gauguaUA GGGG AUCUA GCUUAAACac      a
caucacaaac    uu        A    -     U          uguguu 

Annotation confidence High

Genome context

KK088207.1: 2588271-2588373 [+]

Mature cpi-miR-10a-5p

• Accession: MIMAT0037625
• Description: Chrysemys picta cpi-miR-10a-5p mature miRNA
• Sequence: 21 - UACCCUGUAGAUCCGAAUUUGU - 42
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-10a-3p

• Accession: MIMAT0037626
• Description: Chrysemys picta cpi-miR-10a-3p mature miRNA
• Sequence: 61 - CAAAUUCGUAUCUAGGGGAAU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196