Stem-loop cpi-mir-20b

Accession

MI0029408

Description

Chrysemys picta cpi-mir-20b precursor miRNA

Sequence

4815 reads, 53.0 reads per million, 12 experiments

uuuuguccuagcaguauCAAAGUGCUCAUAGUGCAGGUAGUuuuugaauuggaucuACUGUAAUGUGGGCACUUAUAGUacugccagauaaaaug
(((((((...(((((((..(((((((((((.(((((.(((.(((......))).)))))))).)))))))))))...)))))))..)))))))..

Structure

--       cua       -CA           G     G   U   ug 
  uuuuguc   gcaguau   AAGUGCUCAUA UGCAG UAG uuu  a
  |||||||   |||||||   ||||||||||| ||||| ||| |||   
  aaaauag   cgucaUG   UUCACGGGUGU AUGUC Auc agg  a
gu       -ac       AUA           A     -   u   uu 

Annotation confidence High

Genome context

KK088187.1: 4591349-4591443 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpi-mir-20b

Mature cpi-miR-20b-5p

• Accession: MIMAT0037649
• Description: Chrysemys picta cpi-miR-20b-5p mature miRNA
• Sequence: 18 - CAAAGUGCUCAUAGUGCAGGUAGU - 41
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-20b-3p

• Accession: MIMAT0037650
• Description: Chrysemys picta cpi-miR-20b-3p mature miRNA
• Sequence: 57 - ACUGUAAUGUGGGCACUUAUAGU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196