Stem-loop cpi-mir-21

Accession

MI0029409

Description

Chrysemys picta cpi-mir-21 precursor miRNA

Sequence

413710 reads, 4831.0 reads per million, 12 experiments

cuguaccauccugucggaUAGCUUAUCAGACUGAUGUUGACUGuuggaucucauggCAACAACAGUCGGUAGGCUGUCUgacauuuugguaucuuu
..((((((...((((((((((((((((.(((((.(((((.((((........))))))))).)))))))))))))))))))))...))))))....

Structure

--cu      ucc                A     A     A    ugg 
    guacca   ugucggaUAGCUUAUC GACUG UGUUG CUGu   a
    ||||||   |||||||||||||||| ||||| ||||| ||||    
    uauggu   acagUCUGUCGGAUGG CUGAC ACAAC ggua   u
uuuc      uuu                -     A     -    cuc 

Annotation confidence High

Genome context

KK088184.1: 632951-633046 [+]

Mature cpi-miR-21-5p

• Accession: MIMAT0037651
• Description: Chrysemys picta cpi-miR-21-5p mature miRNA
• Sequence: 19 - UAGCUUAUCAGACUGAUGUUGACUG - 43
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-21-3p

• Accession: MIMAT0037652
• Description: Chrysemys picta cpi-miR-21-3p mature miRNA
• Sequence: 57 - CAACAACAGUCGGUAGGCUGUCU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196