Stem-loop cpi-mir-22

Accession

MI0029410

Description

Chrysemys picta cpi-mir-22 precursor miRNA

Sequence

ccggcuaacuagcaccAGUUCUUCAGUGGCAAGCUUUAcgucccugucuagcagcuaAAGCUGCCAGUUGAAGAACUGUugaauguagccacucu
..(((((.....((.((((((((((((((((.((((((.(...((((...)))))))))))))))).))))))))))).))....))))).....

Structure

---cc     acuag  c           -     A      c ucc    c 
     ggcua     ca cAGUUCUUCAG UGGCA GCUUUA g   cugu  
     |||||     || ||||||||||| ||||| |||||| |   |||| u
     ccgau     gu GUCAAGAAGUU ACCGU CGAAau c   gacg  
ucuca     -guaa  U           G     -      - ---    a 

Annotation confidence Not enough data

Genome context

KK082936.1: 7650182-7650276 [+]

Mature cpi-miR-22-5p

• Accession: MIMAT0037653
• Description: Chrysemys picta cpi-miR-22-5p mature miRNA
• Sequence: 17 - AGUUCUUCAGUGGCAAGCUUUA - 38
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-22-3p

• Accession: MIMAT0037654
• Description: Chrysemys picta cpi-miR-22-3p mature miRNA
• Sequence: 58 - AAGCUGCCAGUUGAAGAACUGU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196