Stem-loop cpi-mir-26-2

Accession

MI0029416

Description

Chrysemys picta cpi-mir-26-2 precursor miRNA

Sequence

7228767 reads, 79988.0 reads per million, 12 experiments

ugcggaggccguagcccggUUCAAGUAAUCCAGGAUAGGCUguuaccaggcagcacGGCCUAUUCUUGAUUACUUGUUUcaggaggcggcugcuggcg
..(((.((((((..((.((..(((((((((.((((((((((((...........)))))))))))).)))))))))..)).))..)))))).)))...

Structure

-ug   a      ag  c  UU         C            uacc 
   cgg ggccgu  cc gg  CAAGUAAUC AGGAUAGGCUgu    a
   ||| ||||||  || ||  ||||||||| ||||||||||||    g
   guc ucggcg  gg cU  GUUCAUUAG UCUUAUCCGGca    g
gcg   g      ga  a  UU         U            cgac 

Annotation confidence Medium

Genome context

KK088209.1: 19565507-19565604 [-]

Mature cpi-miR-26-5p

• Accession: MIMAT0037660
• Description: Chrysemys picta cpi-miR-26-5p mature miRNA
• Sequence: 20 - UUCAAGUAAUCCAGGAUAGGCU - 41
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-26-2-3p

• Accession: MIMAT0037662
• Description: Chrysemys picta cpi-miR-26-2-3p mature miRNA
• Sequence: 57 - GGCCUAUUCUUGAUUACUUGUUU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196