Stem-loop cpi-mir-29a-2

Accession

MI0029421

Description

Chrysemys picta cpi-mir-29a-2 precursor miRNA

Sequence

136765 reads, 1389.0 reads per million, 12 experiments

aaucucucuuacacaggcUGACCGAUCUCUCUUGGUGUUCAGAguuucaguuuuugucUAGCACCAUUUGAAAUCGGUUAUGauguagggggaaa
..((((.((((((((...((((((((.((...(((((((.(((.............))))))))))...)).)))))))))).))))))))))..

Structure

aa    u      -  ggc        C  UCU       C   guuuc 
  ucuc cuuaca ca   UGACCGAU UC   UGGUGUU AGA     a
  |||| |||||| ||   |||||||| ||   ||||||| |||     g
  aggg ggaugu GU   AUUGGCUA AG   ACCACGA Ucu     u
aa    -      a  ---        A  UUU       -   guuuu 

Annotation confidence High

Genome context

chr4: 87775-87869 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-29a-2

Mature cpi-miR-29a-2-5p

• Accession: MIMAT0037670
• Description: Chrysemys picta cpi-miR-29a-2-5p mature miRNA
• Sequence: 19 - UGACCGAUCUCUCUUGGUGUUCAGA - 43
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-29a-3p

• Accession: MIMAT0037669
• Description: Chrysemys picta cpi-miR-29a-3p mature miRNA
• Sequence: 59 - UAGCACCAUUUGAAAUCGGUUAUG - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196