Stem-loop cpi-mir-29b-1

Accession

MI0029422

Description

Chrysemys picta cpi-mir-29b-1 precursor miRNA

Literature search

1 open access papers mention cpi-mir-29b-1
(8 sentences)

Sequence

82506 reads, 853.0 reads per million, 12 experiments

cucccucaggaagCUGGUUUCAUAUGGUGGUUUAGauuuaacuacuccguguCUAGCACCAUUUGAAAUCAGUGUucuuggaggaagaaug
.(((.(((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))))).)))......

Structure

-----c   c       -          U      GU      uuaac 
      ucc ucaggaa gCUGGUUUCA AUGGUG  UUAGau     u
      ||| ||||||| |||||||||| ||||||  ||||||     a
      agg gguucuU UGACUAAAGU UACCAC  GAUCug     c
guaaga   a       G          U      --      ugccu 

Annotation confidence High

Genome context

KK082943.1: 6077555-6077645 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-29b-1

Mature cpi-miR-29b-5p

• Accession: MIMAT0037671
• Description: Chrysemys picta cpi-miR-29b-5p mature miRNA
• Sequence: 14 - CUGGUUUCAUAUGGUGGUUUAG - 35
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-29b-3p

• Accession: MIMAT0037672
• Description: Chrysemys picta cpi-miR-29b-3p mature miRNA
• Sequence: 53 - CUAGCACCAUUUGAAAUCAGUGU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196