Stem-loop cpi-mir-29b-2

Accession

MI0029423

Description

Chrysemys picta cpi-mir-29b-2 precursor miRNA

Literature search

1 open access papers mention cpi-mir-29b-2
(8 sentences)

Sequence

81132 reads, 834.0 reads per million, 12 experiments

gucuucuucuggaagCUGGUUUCACAUGGUGGCUUAGauuuucccaucuuuguauCUAGCACCAUUUGAAAUCAGUGUucuaggagcaagaa
.(((((((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).))))))))).)))).

Structure

g    -         -          C      G  U    uuuccc 
 ucuu cuucuggaa gCUGGUUUCA AUGGUG CU AGau      a
 |||| ||||||||| |||||||||| |||||| || ||||       
 agaa gaggaucuU UGACUAAAGU UACCAC GA UCua      u
a    c         G          U      -  -    uguuuc 

Annotation confidence High

Genome context

chr4: 88729-88820 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-29b-2

Mature cpi-miR-29b-2-5p

• Accession: MIMAT0037673
• Description: Chrysemys picta cpi-miR-29b-2-5p mature miRNA
• Sequence: 16 - CUGGUUUCACAUGGUGGCUUAG - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-29b-3p

• Accession: MIMAT0037672
• Description: Chrysemys picta cpi-miR-29b-3p mature miRNA
• Sequence: 56 - CUAGCACCAUUUGAAAUCAGUGU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196