Stem-loop cpi-mir-30a

Accession

MI0029424

Description

Chrysemys picta cpi-mir-30a precursor miRNA

Sequence

1164793 reads, 12069.0 reads per million, 12 experiments

gcuguugacagugagcgacUGUAAACAUCCUCGACUGGAAGCUGugaagcagcagauggggCUUUCAGUCGGAUGUUUGCAGCUGccaacugccacagacu
.((((.(.((((..(((.((((((((((((..(((((((((((.(............).))))))))))))))))))))))).)))..))))).))))...

Structure

--g    u a    ga   a            UC           G gaagc 
   cugu g cagu  gcg cUGUAAACAUCC  GACUGGAAGCU u     a
   |||| | ||||  ||| ||||||||||||  ||||||||||| |      
   gaca c guca  cGU GACGUUUGUAGG  CUGACUUUCgg g     g
uca    c -    ac   C            --           g uagac 

Annotation confidence High

Genome context

KK083109.1: 173874-173974 [-]

Mature cpi-miR-30a-5p

• Accession: MIMAT0037674
• Description: Chrysemys picta cpi-miR-30a-5p mature miRNA
• Sequence: 20 - UGUAAACAUCCUCGACUGGAAGCUG - 44
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-30a-3p

• Accession: MIMAT0037675
• Description: Chrysemys picta cpi-miR-30a-3p mature miRNA
• Sequence: 62 - CUUUCAGUCGGAUGUUUGCAGCUG - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196