Stem-loop cpi-mir-30c-2

Accession

MI0029427

Description

Chrysemys picta cpi-mir-30c-2 precursor miRNA

Sequence

477666 reads, 4997.0 reads per million, 12 experiments

agcucugaguggcagguacUGUAAACAUCCUACACUCUCAGCUGuggaaaguaaggaagCUGGGAGAAGGCUGUUUACUCUcucugccuuggaaagcag
.(((......((((((....(((((((.(((...(((((((((..............))))))))).))).)))))))....))))))......)))..

Structure

-a   cugagu      uacU       U   ACA         Guggaa 
  gcu      ggcagg    GUAAACA CCU   CUCUCAGCU      a
  |||      ||||||    ||||||| |||   |||||||||       
  cga      ccgucu    CAUUUGU GGA   GAGGGUCga      g
ga   aagguu      cUCU       C   --A         aggaau 

Annotation confidence High

Genome context

KK083109.1: 125616-125714 [-]

Mature cpi-miR-30c-5p

• Accession: MIMAT0037678
• Description: Chrysemys picta cpi-miR-30c-5p mature miRNA
• Sequence: 20 - UGUAAACAUCCUACACUCUCAGCUG - 44
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-30c-2-3p

• Accession: MIMAT0037680
• Description: Chrysemys picta cpi-miR-30c-2-3p mature miRNA
• Sequence: 60 - CUGGGAGAAGGCUGUUUACUCU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196