Stem-loop cpi-mir-31

Accession

MI0029430

Description

Chrysemys picta cpi-mir-31 precursor miRNA

Sequence

144848 reads, 1518.0 reads per million, 12 experiments

guuauuaaucagacuuugaggggAGGCAAGAUGUUGGCAUAGCUguugaccuaauaaccUGCUAUGCCAACAUAUUGUCAUCUuucucgucuauuugca
.....(((..((((...((((((.(((((.(((((((((((((.((((......))))..))))))))))))).))))).))))))..))))..)))..

Structure

guuau   uc    uuu      A     G             -U    ac 
     uaa  agac   gagggg GGCAA AUGUUGGCAUAGC  guug  c
     |||  ||||   |||||| ||||| |||||||||||||  ||||   
     guu  ucug   cuuUCU CUGUU UACAACCGUAUCG  caau  u
---ac   ua    -cu      A     A             Uc    aa 

Annotation confidence High

Genome context

KK082933.1: 116624-116722 [-]

Mature cpi-miR-31-5p

• Accession: MIMAT0037685
• Description: Chrysemys picta cpi-miR-31-5p mature miRNA
• Sequence: 24 - AGGCAAGAUGUUGGCAUAGCU - 44
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-31-3p

• Accession: MIMAT0037686
• Description: Chrysemys picta cpi-miR-31-3p mature miRNA
• Sequence: 60 - UGCUAUGCCAACAUAUUGUCAUCU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196