Stem-loop cpi-mir-32

Accession

MI0029431

Description

Chrysemys picta cpi-mir-32 precursor miRNA

Sequence

3810 reads, 41.0 reads per million, 12 experiments

gcuugcucugguggagaUAUUGCACAUUACUAAGUUGcauguugucacggccucagugCAAUUUAGUGUGUGCGAUAUUUucacaugagugcaugcac
((.(((((..(((((((((((((((((.((((((((((((((((...))))....)))))))))))))))))))))))))))))..))..))).))..

Structure

--  u   --  ug                 U            ----    u 
  gc ugc  uc  guggagaUAUUGCACAU ACUAAGUUGcau    guug  
  || |||  ||  ||||||||||||||||| ||||||||||||    |||| c
  cg acg  ag  cacuUUUAUAGCGUGUG UGAUUUAACgug    cggc  
ca  u   ug  ua                 -            acuc    a 

Annotation confidence High

Genome context

KK082940.1: 436884-436981 [-]

Mature cpi-miR-32-5p

• Accession: MIMAT0037687
• Description: Chrysemys picta cpi-miR-32-5p mature miRNA
• Sequence: 18 - UAUUGCACAUUACUAAGUUG - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-32-3p

• Accession: MIMAT0037688
• Description: Chrysemys picta cpi-miR-32-3p mature miRNA
• Sequence: 59 - CAAUUUAGUGUGUGCGAUAUUU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196