Stem-loop cpi-mir-33-1

Accession

MI0029432

Description

Chrysemys picta cpi-mir-33-1 precursor miRNA

Sequence

824 reads, 9.0 reads per million, 12 experiments

ggggggcagcuguaGUGCAUUGUAGUUGCAUUGCauguucuggcaguacuugugCAAUGUUUCUGCAGUGCAGUAcagaggcacucuc
(((((((..(((((.((((((((((..((((((((((.............))))))))))..)))))))))).)))))..)).)))))

Structure

     -  ag     G          UU          uucug 
ggggg gc  cugua UGCAUUGUAG  GCAUUGCaug     g
||||| ||  ||||| ||||||||||  ||||||||||     c
cucuc cg  gacAU ACGUGACGUC  UGUAACgugu     a
     a  ga     G          UU          ucaug 

Annotation confidence High

Genome context

KK088194.1: 321205-321292 [-]

Mature cpi-miR-33-5p

• Accession: MIMAT0037689
• Description: Chrysemys picta cpi-miR-33-5p mature miRNA
• Sequence: 15 - GUGCAUUGUAGUUGCAUUGC - 34
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-33-3p

• Accession: MIMAT0037690
• Description: Chrysemys picta cpi-miR-33-3p mature miRNA
• Sequence: 55 - CAAUGUUUCUGCAGUGCAGUA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196