Stem-loop cpi-mir-34a

Accession

MI0029434

Description

Chrysemys picta cpi-mir-34a precursor miRNA

Literature search

1 open access papers mention cpi-mir-34a
(1 sentences)

Sequence

2310 reads, 25.0 reads per million, 12 experiments

gugaguguuucuuUGGCAGUGUCUUAGCUGGUUGUUGugagcaauaaucaaggaagCAAUCAGCAAGUAUACUGCCCUagaagugcugcacau
((((((((((((..(((((((((((.(((((((((..(((.......))).....)))))))))))).))))))))..))))))))).)))..

Structure

--   -         uU        -   A         ---UG   gc 
  gug aguguuucu  GGCAGUGU CUU GCUGGUUGU     uga  a
  ||| |||||||||  |||||||| ||| |||||||||     |||  a
  cac ucgugaaga  CCGUCAUA GAA CGACUAACg     acu  u
ua   g         UC        U   -         aagga   aa 

Annotation confidence High

Genome context

chr24: 6970112-6970204 [+]

Mature cpi-miR-34a-5p

• Accession: MIMAT0037692
• Description: Chrysemys picta cpi-miR-34a-5p mature miRNA
• Sequence: 14 - UGGCAGUGUCUUAGCUGGUUGUUG - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-34a-3p

• Accession: MIMAT0037693
• Description: Chrysemys picta cpi-miR-34a-3p mature miRNA
• Sequence: 57 - CAAUCAGCAAGUAUACUGCCCU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196