Stem-loop cpi-mir-92a-1

Accession

MI0029437

Description

Chrysemys picta cpi-mir-92a-1 precursor miRNA

Sequence

uguaccccuuucuacacAGGUUGGGAUCAGUUGCAAUGCUgugugugccuguagUAUUGCACUUGUCCCGGCCUguugagguugguggggacag
(((.((((..(((..((((((((((((.(((.(((((((((..........)))))))))))).))))))))))))..))).....))))))).

Structure

-   a    ---uu   ac            C   U         ugug 
 ugu cccc     ucu  acAGGUUGGGAU AGU GCAAUGCUg    u
 ||| ||||     |||  |||||||||||| ||| |||||||||     
 aca gggg     gga  ugUCCGGCCCUG UCA CGUUAUgau    g
g   -    ugguu   gu            U   -         gucc 

Annotation confidence Not enough data

Genome context

KK083096.1: 1396547-1396640 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpi-mir-92a-1

Mature cpi-miR-92a-5p

• Accession: MIMAT0037698
• Description: Chrysemys picta cpi-miR-92a-5p mature miRNA
• Sequence: 18 - AGGUUGGGAUCAGUUGCAAUGCU - 40
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-92a-3p

• Accession: MIMAT0037699
• Description: Chrysemys picta cpi-miR-92a-3p mature miRNA
• Sequence: 55 - UAUUGCACUUGUCCCGGCCU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196