miRBase entry: cpi-mir-92c

Stem-loop cpi-mir-92c

Accession

MI0029440

Description

Chrysemys picta cpi-mir-92c precursor miRNA

Sequence

ccggucccuuucguucuaAGGUUGGGAGAGCUGUAAUUGgcaugacuauuuuucagaggCAUUGCACUCGUCCCGGCCGGAgucagaagggauuugag
..(((((((((.(((((..(((((((((((.((((((.(.(.(((.......)))..).)))))))))).)))))))))))).).)))))))))....

Structure

--cc         c -    aA        -   C      U g -a   cu 
    ggucccuuu g uucu  GGUUGGGA GAG UGUAAU G c  uga  a
    ||||||||| | ||||  |||||||| ||| |||||| | |  |||  u
    uuagggaag c gAGG  CCGGCCCU CUC ACGUUA C g  acu  u
gagu         a u    --        G   -      - g ag   uu

Annotation confidence Not enough data

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Genome context

KK083007.1: 2872254-2872351 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-92c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpi-miR-92c-5p

Accession	MIMAT0037703
Description	Chrysemys picta cpi-miR-92c-5p mature miRNA
Sequence	19 - AGGUUGGGAGAGCUGUAAUUG - 39
Evidence	experimental Illumina [1]

Mature cpi-miR-92c-3p

Accession	MIMAT0037704
Description	Chrysemys picta cpi-miR-92c-3p mature miRNA
Sequence	60 - CAUUGCACUCGUCCCGGCCGGA - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196