Stem-loop cpi-mir-93

Accession

MI0029441

Description

Chrysemys picta cpi-mir-93 precursor miRNA

Sequence

15809 reads, 170.0 reads per million, 12 experiments

ucccagaggcucCAAAGUGCUGUUCGUGCAGGUAGcgugugcagccgacuACUGCCGAGUCAGCGCUUCGCGAgccccccggaca
(((..(.((((((.((((((((((((.((((.(((((.((...)))).))))))))))).)))))))).).))))).)..)))..

Structure

--   ca a     - A        -    U    G   -  u  g 
  ucc  g ggcuc C AAGUGCUG UUCG GCAG UAG cg gu  
  |||  | ||||| | |||||||| |||| |||| ||| || || c
  agg  c ccgAG G UUCGCGAC GAGC CGUC Auc gc cg  
ac   cc c     C C        U    -    -   a  -  a 

Annotation confidence High

Genome context

KK083587.1: 75643-75727 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-93

Mature cpi-miR-93-5p

• Accession: MIMAT0037705
• Description: Chrysemys picta cpi-miR-93-5p mature miRNA
• Sequence: 13 - CAAAGUGCUGUUCGUGCAGGUAG - 35
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-93-3p

• Accession: MIMAT0037706
• Description: Chrysemys picta cpi-miR-93-3p mature miRNA
• Sequence: 51 - ACUGCCGAGUCAGCGCUUCGCGA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196