Stem-loop cpi-mir-100

Accession

MI0029446

Description

Chrysemys picta cpi-mir-100 precursor miRNA

Sequence

1374400 reads, 15781.0 reads per million, 12 experiments

gcccguugccacaAACCCGUAGAUCCGAACUUGUGgucauauuccacaCAAGCUUGUAUCUAUAGGUAUGUGucugcauggcaaaug
(((...(((((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).))))...))).))).....

Structure

-----   cgu   ---    A   C      C   A      guca 
     gcc   ugc   caca ACC GUAGAU CGA CUUGUG    u
     |||   |||   |||| ||| |||||| ||| ||||||    a
     cgg   acg   GUGU UGG UAUCUA GUU GAACac    u
guaaa   --u   ucu    A   A      U   C      accu 

Annotation confidence High

Genome context

KK088232.1: 2339495-2339581 [-]

Mature cpi-miR-100-5p

• Accession: MIMAT0037714
• Description: Chrysemys picta cpi-miR-100-5p mature miRNA
• Sequence: 14 - AACCCGUAGAUCCGAACUUGUG - 35
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-100-3p

• Accession: MIMAT0037715
• Description: Chrysemys picta cpi-miR-100-3p mature miRNA
• Sequence: 49 - CAAGCUUGUAUCUAUAGGUAUGUG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196